Reconcile lifecycle documentation

docs/config.md

@@ -279,6 +279,15 @@ For each `pipeline.scriptorium.artifacts.<name>`:
 
 Narratio adds `session_id=narratio-session-<session_id>` to every Scriptorium request for sticky upstream LLM routing. If an artifact config sets `vars.session_id`, Narratio replaces that value before invoking Scriptorium. Use a different variable name if a prompt needs the raw Narratio session ID as content.
 
+Without `--artifacts`, analyze executes enabled configured artifacts. With an
+explicit `--artifacts` list, the exact named configured artifacts are the
+one-invocation execution set even if their `enabled` values are false; the list
+does not automatically include dependencies. Named artifacts must therefore be
+configured with valid executable fields, and their configured dependencies must
+already be available to analyze. This override affects analyze planning only;
+publish uses the list only to filter configured
+`narratio.artifact.<name>` output rules.
+
 For each artifact input `pipeline.scriptorium.artifacts.<name>.inputs.<input_name>`:
 
 | Field | Type | Required | Rule |

docs/internal/artifacts.md

@@ -45,6 +45,15 @@ ID.
 - `available`: local file exists and validates;
 - `provenance`: availability source.
 
+Configured definitions are always registered. Without an explicit selection,
+the effective analyze set contains enabled definitions. With `--artifacts`, the
+exact named configured definitions become the effective set for that invocation,
+regardless of their `enabled` value; dependencies are not added implicitly.
+Availability is separate from executability: a non-executable configured output
+may be reused from a canonical non-empty file, while an executable definition
+is generated by analyze. Extraction entries are registered from configuration
+and become available only after compatible extraction evidence is hydrated.
+
 Current provenance values:
 
 - `generated.current_analyze_run`
@@ -81,6 +90,10 @@ Previous-session sources (`narratio.previous_session.artifact.*`):
 - prefer manifest-backed previous-input paths;
 - fallback to existing previous-cache filesystem paths.
 
+Source absence is evaluated by the consuming artifact input. An optional input
+is omitted from that invocation; a required input fails resolution. This is
+separate from a stage's lifecycle outcome.
+
 Validation by content type:
 
 - transcript JSON built-ins: JSON with top-level `segments` array;

docs/internal/stage-analyze.md

@@ -8,13 +8,15 @@ Execute selected configured Scriptorium artifacts in dependency order and materi
 
 - configured artifacts from `pipeline.scriptorium.artifacts`
 - optional selected artifact keys supplied through the stage environment
-- built-in/configured/previous-session source references in artifact inputs
+- built-in, configured, extraction, and previous-session source references in
+  artifact inputs
 
 Supported source families:
 - built-ins: `narratio.transcript.*`, `narratio.bounds.session`
 - prepared stable inputs: `narratio.input.players`, `narratio.input.party`,
   `narratio.input.glossary`
 - configured artifacts: `narratio.artifact.<key>`
+- extraction lanes: `narratio.extraction.<key>`
 - previous-session cache: `narratio.previous_session.artifact.<key>`
 
 ## Outputs
@@ -24,11 +26,22 @@ Supported source families:
 
 ## Key Behavior
 
-- skips with metadata when Scriptorium config is missing or no executable artifacts remain.
-- builds runtime artifact catalog (built-ins + configured artifacts).
+- when Scriptorium is absent or no configured artifact is executable, completes
+  successfully with no outputs and records explanatory metadata. This is not an
+  explicit self-skip: both manifests record success, satisfy publish's
+  prerequisite, and an ordinary later run reuses the result until forced.
+- builds a runtime artifact catalog containing built-ins, configured artifacts,
+  and configured extraction lanes. Extraction availability is hydrated only
+  from compatible successful extraction evidence.
+- uses enabled configured artifacts by default. An explicit `--artifacts`
+  selection is a one-invocation override: it makes exactly the named configured
+  artifacts executable even when disabled, and does not automatically include
+  dependencies. A selected artifact's dependencies must instead already be
+  available to the catalog.
 - marks non-executable configured artifacts as reusable when output files already exist.
 - validates selected artifact dependency order (cycle-safe topo ordering).
 - resolves required/optional inputs per artifact source definition.
+- omits an unavailable optional input; an unavailable required input fails.
 - resolves prepared stable input sources from `inputs/*.yml` materialized by `prepare`.
 - resolves previous-session sources from local `previous/` cache only.
 - runs optional render-debug, then artifact execution.

docs/internal/stage-publish.md

@@ -25,7 +25,10 @@ Exact remote placement and the operator workflow belong in
 
 ## Key Behavior
 
-- stage can self-skip when publish disabled or run upload disabled.
+- when publishing or run upload is disabled, completes successfully with no
+  outputs and records explanatory metadata. This is not an explicit self-skip:
+  both manifests record success, and an ordinary later run reuses that result
+  until publish is forced.
 - validates prerequisite stage success and object-store availability.
 - derives a deterministic run-archive allowlist from the validated run
   `manifest.json`: declared run-local outputs, logs, generated configs, and the

docs/internal/stage-render.md

@@ -20,7 +20,9 @@ Render Markdown transcript artifacts from normalized JSON transcripts via Seriat
 - resolves inputs manifest-first, then canonical fallback.
 - writes run-local outputs first, then materializes canonical session outputs.
 - records input provenance, output paths, adapter metadata, logs, and generated config refs.
-- skips with stage metadata when `pipeline.render.enabled=false`.
+- when `pipeline.render.enabled=false`, completes successfully with no outputs
+  and records explanatory metadata. This is not an explicit self-skip: both
+  manifests record success, and enabling render later requires a forced run.
 
 ## Failure Semantics
 

docs/operations.md

@@ -92,6 +92,14 @@ Execution rules:
   repeated self-skip with the same reason and no outputs is stable and does not
   perpetually rerun downstream work.
 
+An explicit self-skip is a durable `skipped` stage outcome that later runs
+reconsider. It differs from successful no-output execution: disabled `render`
+and `publish`, and absent or no-executable `analyze`, record `succeeded` with
+metadata and no outputs. Ordinary later runs reuse those successful results;
+force the affected stage after enabling or configuring it. Optional artifact
+inputs are omitted only from the consuming artifact invocation and do not make
+the stage self-skip.
+
 Single-stage execution:
 
 ```bash

docs/roadmap/implementation.md

@@ -12,7 +12,7 @@ into this document. The line ranges below are stable references to the evidence
 and acceptance criteria that the implementing agent must read for each stage.
 
 This plan owns remediation progress; a separate `audit.md` tracker is not needed.
-All stages are pending when this plan is created.
+All stages begin pending when this plan is created.
 
 | Stage | Summary | Primary findings | Status |
 | ---: | --- | --- | --- |
@@ -36,18 +36,18 @@ All stages are pending when this plan is created.
 | 18 | Serialize restore transitions and make restored paths portable | RSK-006, RSK-008 | Completed |
 | 19 | Bind audio cache reuse to remote object identity | RSK-007 | Completed |
 | 20 | Unify previous-source readiness and eliminate duplicate transfers | COR-010, EFF-001 | Completed |
-| 21 | Tighten configuration parsing, values, and expectations | COR-012–COR-015, TST-011, TST-014 | Pending |
-| 22 | Make product configuration truthful and own remote temp files | COR-024, RSK-009, ARC-004 | Pending |
-| 23 | Stream WhisperX uploads and make the adapter race-safe | COR-016, EFF-002, TST-001 | Pending |
-| 24 | Correct prepare/transcribe transition semantics | COR-017–COR-019, TST-008 | Pending |
-| 25 | Enforce output-path authority and shared singleton resolution | ARC-006, DUP-006 | Pending |
-| 26 | Centralize typed extraction-bundle evidence | DUP-007 | Pending |
-| 27 | Bind extraction reuse to direct transcript identity | COR-020, TST-009 | Pending |
-| 28 | Establish one effective artifact set and catalog bootstrap | COR-022, ARC-007, DUP-008 | Pending |
-| 29 | Make analyze resolution typed, optional, actionable, and deterministic | COR-021, COR-023, RSK-015, SIM-003, TST-010 | Pending |
-| 30 | Remove misleading contracts and align Audita ownership | ARC-001, ARC-005, SIM-004, COM-003, COM-006 | Pending |
-| 31 | Enforce CI validation and streamline the assembled test suite | TST-012, TST-015 | Pending |
-| 32 | Reconcile lifecycle/analyze documentation and close the remediation | COM-002, COM-005 | Pending |
+| 21 | Tighten configuration parsing, values, and expectations | COR-012–COR-015, TST-011, TST-014 | Completed |
+| 22 | Make product configuration truthful and own remote temp files | COR-024, RSK-009, ARC-004 | Completed |
+| 23 | Stream WhisperX uploads and make the adapter race-safe | COR-016, EFF-002, TST-001 | Completed |
+| 24 | Correct prepare/transcribe transition semantics | COR-017–COR-019, TST-008 | Completed |
+| 25 | Enforce output-path authority and shared singleton resolution | ARC-006, DUP-006 | Completed |
+| 26 | Centralize typed extraction-bundle evidence | DUP-007 | Completed |
+| 27 | Bind extraction reuse to direct transcript identity | COR-020, TST-009 | Completed |
+| 28 | Establish one effective artifact set and catalog bootstrap | COR-022, ARC-007, DUP-008 | Completed |
+| 29 | Make analyze resolution typed, optional, actionable, and deterministic | COR-021, COR-023, RSK-015, SIM-003, TST-010 | Completed |
+| 30 | Remove misleading contracts and align Audita ownership | ARC-001, ARC-005, SIM-004, COM-003, COM-006 | Completed |
+| 31 | Enforce CI validation and streamline the assembled test suite | TST-012, TST-015 | Completed |
+| 32 | Reconcile lifecycle/analyze documentation and close the remediation | COM-002, COM-005 | Completed |
 
 ## Governing decisions
 
@@ -1082,6 +1082,8 @@ documentation/example checks, verify clean generated/example state, inspect the
 final diff and repository status, and mark this stage complete only when no
 required remediation remains.
 
+**Status:** Completed.
+
 ## Finding traceability inventory
 
 This inventory assigns exactly one primary implementation stage to each confirmed

docs/troubleshooting.md

@@ -436,7 +436,7 @@ Diagnostics:
 
 ```bash
 ls -la /path/to/secrets_dir
-env | grep -E 'OBJECT_STORAGE|AWS|AUDITA|SCRIPTORIUM'
+env | sed 's/=.*//' | grep -E 'OBJECT_STORAGE|AWS|AUDITA|SCRIPTORIUM'
 ```
 
 Safe fix:

internal/doccheck/doccheck_test.go

@@ -5,6 +5,7 @@ import (
 	"os"
 	"path/filepath"
 	"regexp"
+	"strconv"
 	"strings"
 	"testing"
 
@@ -65,6 +66,26 @@ func TestReleaseWorkflowRequiresValidation(t *testing.T) {
 	}
 }
 
+func TestRoadmapTraceabilityOwnersAreComplete(t *testing.T) {
+	root := repositoryRoot(t)
+	data, err := os.ReadFile(filepath.Join(root, "docs", "roadmap", "implementation.md"))
+	if err != nil {
+		t.Fatalf("read implementation roadmap: %v", err)
+	}
+
+	statuses := roadmapSummaryStatuses(t, string(data))
+	checked := 0
+	for _, owner := range roadmapTraceabilityOwners(t, string(data)) {
+		checked++
+		if statuses[owner] != "Completed" {
+			t.Errorf("traceability owner %d has status %q, want Completed", owner, statuses[owner])
+		}
+	}
+	if checked == 0 {
+		t.Fatal("roadmap traceability inventory has no owners")
+	}
+}
+
 func repositoryRoot(t *testing.T) string {
 	t.Helper()
 	root, err := filepath.Abs(filepath.Join("..", ".."))
@@ -124,6 +145,53 @@ func relativeToRoot(root, path string) string {
 	return relative
 }
 
+func roadmapSummaryStatuses(t *testing.T, document string) map[int]string {
+	t.Helper()
+	statuses := map[int]string{}
+	for _, line := range strings.Split(document, "\n") {
+		fields := strings.Split(line, "|")
+		if len(fields) != 6 {
+			continue
+		}
+		owner, err := strconv.Atoi(strings.TrimSpace(fields[1]))
+		if err != nil {
+			continue
+		}
+		statuses[owner] = strings.TrimSpace(fields[4])
+	}
+	if len(statuses) == 0 {
+		t.Fatal("roadmap summary has no status entries")
+	}
+	return statuses
+}
+
+func roadmapTraceabilityOwners(t *testing.T, document string) []int {
+	t.Helper()
+	const inventoryHeading = "## Finding traceability inventory"
+	const nextHeading = "## Open Questions"
+	start := strings.Index(document, inventoryHeading)
+	if start < 0 {
+		t.Fatal("roadmap traceability inventory is missing")
+	}
+	inventory := document[start+len(inventoryHeading):]
+	if end := strings.Index(inventory, nextHeading); end >= 0 {
+		inventory = inventory[:end]
+	}
+
+	owners := []int{}
+	for _, line := range strings.Split(inventory, "\n") {
+		fields := strings.Split(line, "|")
+		if len(fields) != 4 {
+			continue
+		}
+		owner, err := strconv.Atoi(strings.TrimSpace(fields[2]))
+		if err == nil {
+			owners = append(owners, owner)
+		}
+	}
+	return owners
+}
+
 type woodpeckerWorkflow struct {
 	Steps map[string]woodpeckerStep `yaml:"steps"`
 }