notarius/docs/internal/pipeline.md

Pipeline Internals

The implemented resolver and runner live in internal/framework/pipeline. Their fixed workflow and ownership boundaries are defined by Architecture. Configuration fields, defaults, and selectable keys are defined in Configuration.

Resolution fixes the selected lanes and all stage bindings; preparation constructs every selected implementation before the runner begins source work. After serial input parsing and chunking, the runner dispatches extract work to one bounded run-wide worker pool in chunk-first, lane-second order. Each lane's merge and normalize operations remain serial and may overlap other lanes once all extracts for that lane are terminal.

Resolution

internal/core/config.Config.Resolve validates the loaded configuration, selects the named profile, applies the runtime inputs supplied by the CLI, and calls pipeline.ResolvePipeline.

ResolvePipeline:

1. selects and sorts artifact lanes;
2. completes omitted bindings using the documented configuration defaults;
3. looks up each module and validator spec without constructing it;
4. for a typed extractor, derives its artifact kind, requires the codec, and selects exact-type merger, normalizer, and validator variants;
5. checks required and provided capabilities in workflow order;
6. resolves target-aware reference bindings and validator chains;
7. validates each selected module and validator option set through its registry entry; and
8. calculates a digest over the resolved structure, including typed artifact kind and schema identity and the effective validator policy in its resolved execution order.

Resolution returns a ResolvedPipeline containing ordered lanes, concrete bindings, validator chains, reference targets, and the digest. It does not read reference bytes or construct runtime modules. CLI lane and reference selector syntax is defined in the CLI reference.

The digest includes each resolved validator chain's stage, lane, owning module, ordered validator bindings, execution classes, targets, and artifact kinds. Changing a default chain or an explicit override therefore changes pipeline identity whenever it changes the effective validator policy.

Reference Materialization

The CLI calls MaterializeReferences after resolution and before constructing the LLM client or running the pipeline. The materializer checks each binding against its resolved target declaration, reads and validates the file, and builds both a contracts.ReferenceSet and provenance-only metadata on the corresponding ResolvedReferenceTarget.

The runner clones the resulting set into the chunk, extract, merge, or normalize request that owns the target. LLM-backed extensions may convert those items into named prompt inputs. Reference content remains separate from source evidence and source digests.

Binding precedence, path resolution, accepted content, and media-type behavior are configuration contracts; see Configuration. Durable provenance is defined in the JSON output contract, while runtime sensitive-data handling belongs in Operations.

Registries And Specs

pipeline.Registries holds option validators and run-local builders used during resolution and preparation. pipeline.ModuleCatalog exposes their specs during configuration validation and resolution. Separate registries exist for every stage and for validators; ValidatorChainRegistry stores production default-chain mappings. Both containers also carry an ArtifactCodecRegistry. Generic registration records one codec per stable artifact kind, validates its schema metadata and JSON Schema, retains the exact schema digest and Go type, and safely encodes or decodes framework-erased values with typed errors on incompatibility.

Typed extractor entries are keyed by module key and declare one artifact kind. Merger, normalizer, and typed-validator variants are keyed by module or validator key plus artifact kind. Chunk and serialized validators occupy separate target namespaces; serialized registrations declare whether they support chunks, artifacts, or both. Duplicate variants and exact Go-type mismatches are rejected deterministically.

Production composition registers the D&D spell-list codec and typed extractor, matching typed merge, normalize, and semantic-validator variants, and serialized JSON validators. Every artifact lane resolves through the typed registries and a matching codec.

A ModuleSpec declares its stage plus required and provided capabilities. Chunk, extract, merge, and normalize specs may also declare reference slots. Registry implementations defensively copy spec metadata, reject duplicate keys, and verify that a constructed implementation reports the registered key. Builder registrations accept ModuleDependencies and cloned configuration options through one BuildRequest. Builders decode those options and retain typed values or injected dependencies in the constructed implementation. Extractors declare their artifact kind, and merger, normalizer, and validator resolution selects the matching typed variant.

A ValidatorSpec declares a validator key and execution class. Resolution uses the execution class to reject incompatible profile bindings before execution. The current production catalog and default chain are listed only in Configuration.

Preparation And Runner Boundary

pipeline.Prepare receives a resolved pipeline, the registries, and shared module dependencies. It constructs input; chunk and its validators; each lane's extract, merge, and normalize modules and validator chains in resolved order; then output. It stops at the first error with pipeline, stage, lane, module, and validator context as applicable. It never invokes an operation method.

PreparedPipeline keeps private constructed executors and exposes cloned resolved input, chunk, lane, and output identities. pipeline.RunInput carries that prepared pipeline, raw source input, run identity and timing, optional session and profile metadata, and checkpoint/debug collaborators. The runner parses source bytes through the already constructed input adapter. Later stage requests receive the generic source model; extract requests receive chunk-scoped input material, while chunk, merge, and normalize requests retain access to the original source material. Input, chunk, and output operation requests do not carry raw module options. The chunk request also does not carry an LLM client; an LLM-backed chunker receives the shared client during preparation. Their operation requests retain run-specific source, reference, profile, session, and metadata context as applicable.

Prepared lanes retain exact-type-checked erased operation closures. The runner uses those closures to keep each value typed through extraction, validation, merge, and normalization.

Source validation requires every unit to carry a canonical self-reference to its containing document and its own unit ID. Explicit clone, checkpoint, and debug boundaries retain that reference, and the canonical source digest covers it deterministically. Chunks use the same source model and carry one canonical reference spanning the first selected unit through the last.

pipeline.RunOutput carries the run manifest, accepted normalized serialized artifacts with lane and normalizer provenance, rejected results, warnings, checkpoint events, and logical files returned by the output encoder. The CLI owns diagnostics and durable filesystem writes after the runner returns.

Execution Flow

The runner:

1. validates its prepared input;
2. parses the raw input with the prepared adapter and validates the generic source document;
3. obtains or executes the chunk result;
4. validates and canonicalizes chunks;
5. dispatches extract jobs in source-chunk then resolved-lane order, starting a bounded lane continuation when all extracts for that lane are terminal;
6. invokes the prepared output encoder and validates its logical file results;
7. returns the assembled manifest, outcomes, warnings, and files.

Within each artifact lane, it reuses the prepared extractor, merger, normalizer, and validators while performing these transitions:

1. extract once per accepted chunk and add runner-owned lane, source, and chunk provenance;
2. validate each extract result and omit rejected results from merge input;
3. skip the rest of the lane when no extract result is accepted;
4. merge accepted extract results in their existing order;
5. validate the merge result and skip normalization on rejection;
6. normalize the accepted merge result;
7. validate and append the accepted normalized result.

Module-provided warnings and payload warnings are promoted only from attempts whose results are accepted and used.

The extract job channel has the same capacity as the effective extract worker count, so dispatch applies backpressure. A fixed continuation executor prevents ready or checkpoint-reused lanes from creating one goroutine each. Workers and continuations publish lane-local results; the coordinator is the only writer of aggregate output and merges those results in resolved lane and source-chunk order.

Chunk Canonicalization

Before lane execution, generic validation requires unique chunk IDs, matching source identity, indexes matching returned order, a valid canonical reference, non-empty content and media type, and at least one valid source unit per chunk. Units may not repeat inside a chunk and must form a contiguous range in source-document order. The chunk reference must exactly match the source and the first and last unit references.

The runner then rebuilds each chunk's unit slice from the source document by unit ID. It preserves the canonical reference, content, media type, and cloned metadata. The framework permits gaps and overlap between separate chunks; stricter coverage policy belongs to the chunk implementation.

Validation And Retries

Chunk, extract, merge, and normalize results pass through the resolved validator chain for their stage and module. Chunk validators receive canonical chunks; typed validators receive the domain value; and serialized validators receive canonical chunk JSON or artifact codec bytes. Validators execute in resolved order and stop at the first error or rejection. An empty chain approves the result.

runWithRetry applies the effective retry policy around module execution and its complete validation chain. A module or validator error becomes a framework error when attempts are exhausted. A rejection becomes a recorded RejectedOutput when attempts are exhausted. Cancellation stops retry processing immediately.

Rejected output is a non-fatal pipeline outcome and does not advance. Warnings from discarded attempts are not promoted. Configuration owns retry counts and validator overrides; see Module Bindings.

Checkpoint And Debug Hooks

The runner depends on recorder and loader interfaces, using no-op implementations when collaborators are absent. Each checkpointed workflow boundary records a running, succeeded, or failed transition. Reuse decisions are consulted in workflow order and accepted payloads are cloned before entering the normal handoff path. Typed extract, merge, and normalize checkpoints store codec bytes with artifact kind, schema ID and version, exact schema digest, and media type. Reuse compares that identity with the prepared codec and decodes through the codec; missing identity, mismatches, corrupt bytes, and decode failures become explicit reuse misses and execute the step normally. Dependency fingerprints and debug content digests use the same stable codec bytes that cross those boundaries.

Debug instrumentation wraps run, stage, attempt, validator, and structured LLM boundaries. Every executed module retry has an attempt envelope containing its candidate, accepted-attempt warnings, rejection or error, and only the LLM calls made by that module attempt. Validator attempts retain independent scopes under validate/. Debug-write failures are framework errors; debug data is never used as a checkpoint source. Typed artifact debug envelopes are domain-neutral, redact sensitive metadata and bytes through the common debug policy, and record codec identity plus schema and content digests.

Checkpoint identity, physical layout, reuse behavior, and debug artifact handling are operator contracts in Operations. Serialization and recorder implementation are inventoried in Internal Overview.

Results And Failures

The runner owns manifest assembly and handoff summaries but not the durable JSON schema. It records resolved module and lane provenance, validator chains, source/reference identities, selected LLM profiles, normalized and rejected summaries, status, and timing. Serialized artifact content remains outside the manifest. Module metadata providers may add non-secret singleton or lane-scoped metadata.

Execution errors include stage, module, lane, or validator context. Once a manifest exists, a failing run returns it with failed status and completion time. Successful status reflects whether any result was rejected. The durable manifest and logical file schemas are defined in the JSON output contract.

On a framework failure, the runner cancels its derived context, stops submitting new extract work, drains started tasks, and skips the output encoder. Parent cancellation takes precedence. Otherwise context-cancellation fallout is discarded when a substantive error exists, and the primary error is selected by stage, resolved lane, and source chunk rather than completion time.

Tests To Inspect

• internal/core/config/effective_config_test.go: config-to-resolution boundary.
• internal/framework/pipeline/profile_test.go: selection, defaults, capabilities, validator chains, and digest behavior.
• internal/framework/pipeline/artifact_codec_registry_test.go: typed codec metadata, registration, erasure safety, strict decoding, and cloning.
• internal/framework/pipeline/typed_resolution_test.go: heterogeneous typed lane resolution and preparation, target-specific validators, incompatibilities, ordering, and schema-sensitive pipeline identity.
• internal/framework/pipeline/runner_concurrency_test.go: bounded dispatch and continuations, reverse completion, stable errors, rejection, cancellation, retries, and independent provider-call limits.
• internal/framework/pipeline/preparation_test.go: option validation, construction order, dependency failures, and the before-source-work boundary.
• internal/framework/pipeline/references_test.go: target resolution and materialization.
• internal/cli/run_test.go: production stage transitions, retries, rejections, warnings, debug hooks, manifests, and end-to-end composition.
• internal/modules/integration/*_test.go and internal/modules/seriatim/input/transcript/runner_test.go: typed runner composition across concrete module families.
• internal/framework/checkpoint/*_test.go: checkpoint serialization and reuse collaborators.