Cut configuration and CLI over to output cache and debug surfaces

examples/dnd-spells-production.config.yml

@@ -1,19 +1,18 @@
-version: 2
+version: 3
 concurrency:
   total_llm: 1
   stage_workers:
     extract: 1
-workspace:
-  directory: /var/lib/notarius
-  diagnostics:
-    enabled: true
-    retention: auto
-  resume:
-    enabled: false
-  debug:
-    enabled: false
-  chunk_cache:
+output:
+  directory: ./notarius-output
+cache:
+  chunk_plans:
     directory: /var/cache/notarius/chunk-plans
+    mode: auto
+  checkpoints:
+    directory: /var/cache/notarius/checkpoints
+debug:
+  directory: ./notarius-debug
 pipelines:
   dnd-session:
     input: seriatim

examples/dnd-spells.config.yml

@@ -1,7 +1,13 @@
-version: 2
-workspace:
-  chunk_cache:
+version: 3
+output:
+  directory: ./notarius-output
+cache:
+  chunk_plans:
     mode: bypass
+  checkpoints:
+    directory: ""
+debug:
+  directory: ./notarius-debug
 pipelines:
   dnd-session:
     input: seriatim