Eric Rakestraw 3bcf2c08dd Add bounded run and plan commands

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integrations

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internal

Separate stage order from invalidation dependencies

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policy

Separate stage order from invalidation dependencies

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roadmap

Add bounded run and plan commands

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cli.md

Add bounded run and plan commands

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config.md

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development.md

Close out the completed audit

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operations.md

Add bounded run and plan commands

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troubleshooting.md

Document prepared Notarius references

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