Add new configuration fields and CLI flags for the upcoming analyze stage enhancements

internal/stage/stage.go

@@ -18,10 +18,11 @@ import (
 
 // Env is the shared dependency container visible to stages.
 type Env struct {
-	Config        *config.Config
-	ArtifactStore artifacts.Store
-	ManifestStore manifest.Store
-	Logger        *slog.Logger
+	Config                   *config.Config
+	SelectedAnalyzeArtifacts []string
+	ArtifactStore            artifacts.Store
+	ManifestStore            manifest.Store
+	Logger                   *slog.Logger
 
 	WhisperX    whisperx.Client
 	Seriatim    seriatim.Runner