Add new configuration fields and CLI flags for the upcoming analyze stage enhancements

internal/app/run.go

@@ -18,10 +18,12 @@ func Run(ctx context.Context, args []string, out io.Writer) error {
 	var sessionPath string
 	var sessionID string
 	var force bool
+	var selectedArtifacts artifactSelectionFlag
 	fs.StringVar(&pipelinePath, "config", "", "path to pipeline.yml (optional; defaults searched)")
 	fs.StringVar(&sessionPath, "session", "", "path to session.yml")
 	fs.StringVar(&sessionID, "session-id", "", "session identifier for session.yml templates")
 	fs.BoolVar(&force, "force", false, "force stage execution (reserved for future behavior)")
+	fs.Var(&selectedArtifacts, "artifacts", "artifact names to execute during analyze (comma-separated or repeatable)")
 
 	if err := fs.Parse(args); err != nil {
 		return fmt.Errorf("run: invalid flags: %w", err)
@@ -47,9 +49,19 @@ func Run(ctx context.Context, args []string, out io.Writer) error {
 	if err := config.Validate(cfg); err != nil {
 		return fmt.Errorf("run: %w", err)
 	}
+	normalizedArtifacts, err := selectedArtifacts.Normalize()
+	if err != nil {
+		return fmt.Errorf("run: invalid --artifacts: %w", err)
+	}
+	if err := validateSelectedAnalyzeArtifacts(cfg, normalizedArtifacts); err != nil {
+		return fmt.Errorf("run: %w", err)
+	}
 
 	stages := BuildFullPlan()
-	summary, err := executeStages(ctx, cfg, stages, RunOptions{Force: force})
+	summary, err := executeStages(ctx, cfg, stages, RunOptions{
+		Force:             force,
+		SelectedArtifacts: normalizedArtifacts,
+	})
 	if err != nil {
 		return fmt.Errorf("run: %w", err)
 	}