Make module-stage LLM handling resilient and report warnings

README.md

@@ -19,6 +19,7 @@ Pipeline behavior includes:
 - conservative spoken-word dysfluency cleanup with semantic guardrails
 - grammar/punctuation/capitalization/formatting cleanup
 - validator-chain enforcement before application
+- malformed module-stage LLM payloads degrade to warnings/rejections instead of failing the run
 - run reports and diagnostics artifacts with secret redaction
 
 ## Build and Install
@@ -130,6 +131,7 @@ audita process transcript.json \
 - Without `--output`, stdout contains transcript JSON only on success.
 - `--report-json` writes a file and is never printed to stdout.
 - stderr is human-readable diagnostics/errors.
+- successful runs remain quiet on stderr even when module warnings are recorded in report/diagnostics artifacts.
 
 For subprocess orchestration guidance, see [`docs/subprocess-operations.md`](docs/subprocess-operations.md).
 
@@ -149,10 +151,10 @@ audita config print-effective --config audita.yml
 ```
 
 For full config-file schema and examples, see [`docs/configuration.md`](docs/configuration.md).
-For output-schema details, see [`docs/output-schemas.md`](docs/output-schemas.md).
-For built-in validator keys and chain definitions, see [`docs/validators.md`](docs/validators.md).
-For embedded prompt assets and prompt metadata behavior, see [`docs/prompts.md`](docs/prompts.md).
-For CLI/process compatibility guarantees, see [`docs/public-contract.md`](docs/public-contract.md).
+For output-schema details, see [`docs/architecture/output-schemas.md`](docs/architecture/output-schemas.md).
+For built-in validator keys and chain definitions, see [`docs/architecture/validators.md`](docs/architecture/validators.md).
+For embedded prompt assets and prompt metadata behavior, see [`docs/architecture/prompts.md`](docs/architecture/prompts.md).
+For CLI/process compatibility guarantees, see [`docs/architecture/public-contract.md`](docs/architecture/public-contract.md).
 
 ### Modules