Verify the integrated application and complete the migration

docs/internal/diagnostics-reporting.md

@@ -75,5 +75,4 @@ Operational handling of transcript-bearing artifacts belongs to
 - `internal/core/diagnostics/*_test.go`
 - `internal/framework/processreport/*_test.go`
 - `internal/core/reporting/report_test.go`
-- `internal/cli/run_test.go`
 - `cmd/audita/main_integration_test.go`

docs/internal/modules.md

@@ -3,7 +3,7 @@
 ## Scope
 
 This document covers internal module contracts and packages. User-selectable keys
-and the default sequence belong to [configuration](../config.md#pipeline-and-output).
+and the default sequence belong to [configuration](../config.md#settings).
 
 ## Module Contract
 

docs/internal/output-schemas.md

@@ -6,7 +6,7 @@
 JSON envelopes and segment fields are defined by the
 [output-file contract](../integrations/output-files.md#corrected-transcript);
 selectable values and defaults belong to
-[configuration](../config.md#pipeline-and-output).
+[configuration](../config.md#settings).
 
 ## Resolution and Encoding
 

docs/internal/pipeline.md

@@ -63,5 +63,4 @@ reports are derived from actual run results. Global requirements are owned by th
 
 - `internal/framework/runner/runner_test.go`
 - `internal/framework/proposal_generation/*_test.go`
-- `internal/cli/run_test.go`
 - `cmd/audita/main_integration_test.go`

docs/internal/validators.md

@@ -4,7 +4,7 @@
 
 This document describes internal validator composition, execution order, and
 decision handling. These registry keys identify implementation components; they
-are not independently selectable through [configuration](../config.md#pipeline-and-output).
+are not independently selectable through [configuration](../config.md#settings).
 
 ## Ownership