Verify the integrated application and complete the migration

docs/integrations/output-files.md

@@ -9,7 +9,7 @@ the [CLI](../cli.md#streams-and-exit-status).
 
 ## Corrected Transcript
 
-The [output setting](../config.md#pipeline-and-output) selects the envelope:
+The [output setting](../config.md#settings) selects the envelope:
 
 | Encoder | JSON shape |
 | --- | --- |

docs/integrations/transcript-glossary-files.md

@@ -42,7 +42,7 @@ The top-level object contains a `glossary` list with at least one entry.
 
 The parser checks empty strings without trimming them. Unknown YAML fields are
 ignored by the glossary parser, unlike the stricter
-[configuration-file schema](../config.md#file-schema).
+[configuration-file schema](../config.md#loading-and-precedence).
 
 The [tiny glossary](../../examples/tiny-glossary.yaml) is a complete copyable input.
 Malformed YAML, an empty/missing glossary, invalid shapes, missing required text,